It is possible that the change in stool color could be caused by vitamins, but it is difficult to say for sure. It is important to monitor any changes in stool color as it could indicate a liver issue. It may be worth stopping the vitamins for a week to see if there is any change. If the child is energetic and not running a fever, those are positive signs. The recent bout of gastroenteritis may also be a factor in the change in stool color.
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