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Is it a period delay due to stopping birth control pills (even though I had my period when I stopped) OR due to my uncontrolled thyroid?

It is possible for a change in thyroid medication to cause a delay in your menstrual cycle. Hyperthyroidism can disrupt your menstrual cycle, potentially causing irregularities or even absence of periods. Once your thyroid levels are back under control, your menstrual cycle should return to normal. If you have any further questions, feel free to ask.